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    Immunohistochemistry protocol optimized at iMM-JLA

    Joana G Antunes, Ana M Biscaia Santos, Ana M Cristóvão Pinto, Ana R Pires

    Published: 2024-03-18 DOI: 10.17504/protocols.io.j8nlkon2wv5r/v1
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    Abstract

    The immunohistochemistry (IHC) protocol is used to showcase the of specific proteins in relation to the arquitecture of the tissue.

    In this method, we use a primary antibody which binds to a specific antigen in the protein of interest. This antibody has a specific host and can be ready to use or undiluted. The secondary antibody is an anti-host IgG which will bind to the primary antibody 1. It's also conjugated with an Horseradish Peroxidase (HRP).

    The HRP will react with the Hydrogen Peroxide in the substract of the DAB solution, oxidizing the DAB, creating a brown deposit on the of the protein of interest.

    Depending on of the protein, we can have staining in the nuclei, the cytoplasm or the cellular membrane.

    Possible variables are:

    the concentration of the antibody;

    type of antigen retrieval;

    the pH of the antigen retrieval solution (for Heat Induced Epitope Retrieval (HIER));

    the time of incubation;

    the tissue used 2.

    You can use this protocol for Formalin-Fixed Paraffin-Embedded samples (FFPE) and Fixed Frozen samples (Gelatin and OCT).

    Before start

    If FFPE - begin protocol after adhering sections to the slides for 1h at 60ºC

    Steps

    Preparation of Wash Buffer

    1.

    Measure 20mL of 20X

    2.

    Make up with distilled water to 1L of total volume

    Sample Preparation after sectioning - FFPE

    3.

    Deparaffinize slides with Xylene for 0h 10m 0s

    4.

    Change Xylene and deparaffinize for another 0h 10m 0s

    5.

    Place slides in Ethanol 100% for 0h 5m 0s

    6.

    Place slides in Ethanol 96% for 0h 5m 0s

    7.

    Place slides in Ethanol 70% for 0h 5m 0s

    8.

    To complete the hydration, place slides in distilled Water for 0h 5m 0s

    Sample Preparation after sectioning - Frozen

    9.

    If frozen samples:

    Remove from storage and let dry.

    If embedded in OCT, put in distilled water for 0h 5m 0s at Room temperature .

    If embedded in gelatin, put in PBS for 0h 5m 0s at 37°C.

    Antigen Retrieval

    10.

    Perform antigen retrieval using PT Module by Thermo Scientific with a cycle of pre-heat to 65ºC and heat to 95ºC for 20 minutes.

    Note
    This equipment, when optimized, allows you to skip the step of deparaffinization in this section, by putting the slides directly through the antigen retrieval step. This equipment allows two buffers with different pH, in which we use EnVision FLEX Target Retrieval Solution High pH and EnVision FLEX Target Retrieval Solution Low pH , depending on the optimization of the antibody.

    Blocking Endogenous Peroxidase and Total Proteins

    11.

    Wash in 1X 3 times for 0h 5m 0s each

    12.

    Put slides in 200mL of 100%

    Note
    Extemporaneous solution. 100% methanol can be used up to 3 times.

    13.

    Put 6mL of at 4°C in the 100% with the slides

    14.

    Cover the slide dish and incubate slides in the solution for 0h 30m 0s

    Note
    Hydrogen Peroxide must be added each time when immersing the slides, to obtain a concentration of 3%.

    15.

    Wash in 1X 3 times for 0h 5m 0s each

    16.

    Draw a limit on the edge of the tissue with the hydrophobic PAP Pen

    17.

    Put on the tissue

    Incubation and Washing

    18.

    Incubate with Primary antibody in the optimized concentration (if needed, dilute in ) for 1h 0m 0s at Room temperature

    Note
    Normally, around 100μL of diluted antibody per section, depending on the size of the tissue.

    19.

    Wash in 1X 3 times for 0h 5m 0s each

    20.

    Incubate with secondary antibody for 0h 30m 0s Room temperature

    Note
    Be sure to match the secondary antibody to the host of the primary antibody (ex: if using mouse anti-CD3 primary, use anti-mouse secondary)

    21.

    Wash in 1X 3 times for 0h 5m 0s each

    22.

    Incubate with for 0h 2m 0s to 0h 5m 0s

    Safety information
    After incubation, pour DAB excess on a paper towel and dispose on type IV waste, with tips and eppendorfs used, avoiding spills at any cost.Clean the incubation chamber and surfaces with Bleach.

    23.

    Wash in distilled water for 0h 5m 0s

    Counterstain and mount

    24.

    Counterstain with for 0h 0m 10s

    Note
    filter Hematoxylin before use

    25.

    Put slides in lukewarm running water for 0h 5m 0s

    26.

    Dehydrate with 96% ethanol for 0h 2m 0s

    27.

    Place in 100% ethanol for 0h 2m 0s

    28.

    Clear in Xylene for 0h 10m 0s

    29.

    Mount with appropriate mounting medium (i.e. )

    Note
    Let the slides dry in a fume hood until complete polymerization of the mounting medium is achieved

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